![]() As of v5.1.0 the input argument can now also be a directoryĬontaining fasta files to run in batch mode. i or -in defines the input file to analyse which is either a nucleotide fasta file or a protein fasta file, depending on the BUSCO mode. To install BUSCO in the current environment, enterīusco -i -m If necessary, update conda by entering conda update -n base conda. ![]() ![]() # Installation with CondaĬonda is an open-source package management and environment management system that simplifies the installation and management of software packages and their dependencies across diverse computing environments.Įnsure sure you have conda version 4.8.4 or higher. It can also be installed manually though in this case care must be taken to ensure all dependencies are installed and configured correctly. To simplify installation, BUSCO is available as a Conda package and a Docker image with all dependencies pre-installed. You should have some familiarity with the basics of working with the command line.īUSCO is a software package that requires a number of third-party tools. Automated selection: matches in multiple domains and contamination.īUSCO runs on the command line, using a Terminal or Console application.Transcriptome mode: assessing assembled transcripts.Genome mode: assessing a genome assembly.
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